Just found this myself for the V2 Rev E/F boards... some diagrams show X4 connected to FT3R1 - do not use that on slim, it's for JTAG hack stuff and can make the light on the usb board do funky things as the FT3R point isn't always 0V when the console is off (X4 seems to be used to time the jtag hack, the LED will blink when JTAG hack is delivered if X4 gets pulled high when the console turns on.)
Also, connect X0 to J2C3.5 so cygnos can do things like shut off your console if you hit read while it is on, and even more useful things like have 100% access to the NAND. If you want kernel UART through toolbox or whatever, connect X2 to J2C3.2 and X3 to J2C3.1.